Species richness and composition of amphibians and reptiles in a fragmented forest landscape in northeastern Bolivia

We quantified patterns of species richness and species composition of frogs and reptiles (lizards and snakes) among three habitats (continuous forest, forest islands, and a seasonally flooded savannah) and between forest island size and isolation classes in a floristic transition zone in northeastern Santa Cruz Department, Bolivia. Species richness was similar across macrohabitats, as was faunal composition of forested habitats, although savannah harbored a distinct herpetofauna. On forest islands, richness and composition of forest frogs was largely related to isolation, whereas reptiles were affected by both isolation and habitat. The observation that isolation rather than area was the primary driver of distribution patterns on forest islands stands in contrast to many studies, and may be a function of (1) the greater range in forest island isolation values compared to area or (2) the long history of isolation in this landscape.     

Spatial and trophic partitioning in cryptic fish communities of shallow subtidal reefs in False Bay, South Africa

Thirty-nine species of cryptic fishes belonging to 16 families were captured on shallow reefs (0-20 m) in False Bay, South Africa using the ichthyocide rotenone. Five samples were collected in each of four depth zones (0-5, 6-10, 11-15 and 16-20 m). The area from which fish were collected in each sample was measured to give an estimate of density. The overall density of cryptic fishes in the area was 3.41 fish m^-2, with the families Congrogadidae and Clinidae being numerically dominant, representing 27.9% and 22.3% of the total sample respectively. The Clinidae were by far the most diverse group, being represented by 17 species, while no other family was represented by more than three species. Multivariate analysis of numerical density revealed that partitioning of spatial resources did occur, with the shallowest samples (0-5 m) forming a group discrete from the deeper samples (6-20 m). Further analysis indicated that the amount of algal cover present was the most important factor influencing community structure, although the abundance of algae is in turn related to depth. The shallowest samples were dominated by members of the families Clinidae, Gobiesocidae and Bythitidae, while the Cheilodactylidae, Tripterygiidae and Ariidae were more important components of deeper water communities (6–20 m). Analysis of percentage volume of prey items in the diets of 21 species revealed that only two species shared diets that were more than 50% similar, and that partitioning of trophic resources was considerable. This revised version was published online in July 2006 with corrections to the Cover Date.     

Vertical partitioning between sister species of Rhizopogon fungi on mesic and xeric sites in an interior Douglas‐fir forest

Understanding ectomycorrhizal fungal (EMF) community structure is limited by a lack of taxonomic resolution and autecological information. Rhizopogon vesiculosus and Rhizopogon vinicolor (Basidiomycota) are morphologically and genetically related species. They are dominant members of interior Douglas‐fir (Pseudotsuga menziesii var. glauca) EMF communities, but mechanisms leading to their coexistence are unknown. We investigated the microsite associations and foraging strategy of individual R. vesiculosus and R. vinicolor genets. Mycelia spatial patterns, pervasiveness and root colonization patterns of fungal genets were compared between Rhizopogon species and between xeric and mesic soil moisture regimes. Rhizopogon spp. mycelia were systematically excavated from the soil and identified using microsatellite DNA markers. Rhizopogon vesiculosus mycelia occurred at greater depth, were more spatially pervasive, and colonized more tree roots than R. vinicolor mycelia. Both species were frequently encountered in organic layers and between the interface of organic and mineral horizons. They were particularly abundant within microsites associated with soil moisture retention. The occurrence of R. vesiculosus shifted in the presence of R. vinicolor towards mineral soil horizons, where R. vinicolor was mostly absent. This suggests that competition and foraging strategy may contribute towards the vertical partitioning observed between these species. Rhizopogon vesiculosus and R. vinicolor mycelia systems occurred at greater mean depths and were more pervasive in mesic plots compared with xeric plots. The spatial continuity and number of trees colonized by genets of each species did not significantly differ between soil moisture regimes.     

Effects of exotic plant invasion on soil nitrogen availability

外来植物入侵对土壤氮循环和氮有效性的影响是入侵成功或进一步加剧的重要原因。通过对比相同研究地点入侵区域和无入侵区域的土壤原位氮状态差异, 探讨了外来植物入侵对土壤氮有效性的影响程度和生理生态学机制。基于107篇相关研究文献数据的整合, 发现植物入侵区域相对于无入侵区域土壤总氮、铵态氮、硝态氮、无机氮、微生物生物量氮含量显著增加, 增幅分别为(50 ± 14)%、(60 ± 24)%、(470 ± 115)%、(69 ± 25)%、(54 ± 20)%。土壤硝态氮含量增幅较大反映硝化作用增强, 这可能增加入侵植物硝态氮利用以及喜硝植物的共存。温带地区植物入侵后土壤的硝态氮含量增幅显著高于亚热带地区。固氮植物入侵后土壤的总氮和无机氮含量增幅均显著高于非固氮植物入侵。木本和常绿植物入侵后土壤的总氮含量增幅分别高于草本和落叶植物入侵; 而土壤铵态氮含量的增幅没有显著差异且与固氮入侵植物占比无明显关系; 然而硝态氮含量的增幅普遍较高且与固氮入侵植物占比显著正相关。外来入侵植物固氮功能以及凋落物质量和数量是影响土壤氮矿化和硝化过程的关键因素。该研究为理解外来植物入侵成功和加剧的机制以及入侵植物功能性状与土壤氮动态之间的关系提供了新的见解。     

The macronutrient composition of wild and cultivated plant foods of West African chimpanzees (Pan troglodytes verus) inhabiting an anthropogenic landscape

Agricultural expansion encroaches on tropical forests and primates in such landscapes frequently incorporate crops into their diet. Understanding the nutritional drivers behind crop-foraging can help inform conservation efforts to improve human-primate coexistence. This study builds on existing knowledge of primate diets in anthropogenic landscapes by estimating the macronutrient content of 24 wild and 11 cultivated foods (90.5% of food intake) consumed by chimpanzees (Pan troglodytes verus) at Bossou, Guinea, West Africa. We also compared the macronutrient composition of Bossou crops to published macronutrient measures of crops from Bulindi, Uganda, East Africa. The composition of wild fruits, leaves, and pith were consistent with previous reports for primate diets. Cultivated fruits were higher in carbohydrates and lower in insoluble fiber than wild fruits, while wild fruits were higher in protein. Macronutrient content of cultivated pith fell within the ranges of consumed wild pith. Oil palm food parts were relatively rich in carbohydrates, protein, lipids, and/or fermentable fiber, adding support for the nutritional importance of the oil palm for West African chimpanzees. We found no differences in the composition of cultivated fruits between Bossou and Bulindi, suggesting that macronutrient content alone does not explain differences in crop selection. Our results build on the current understanding of chimpanzee feeding ecology within forest-agricultural mosaics and provide additional support for the assumption that crops offer primates energetic benefits over wild foods.     

Twilight activity patterns and angling vulnerability of yellowmouth barracuda (Sphyraena viridensis Cuvier, 1829), a range-expanding thermophilic fish

Among the thermophilic fishes that have become established in the north-western Mediterranean as a consequence of sea warming, the yellowmouth barracuda (Sphyraena viridensis Cuvier, 1829) appears to be one of the most successful and abundant in the coastal rocky environment, having increasingly become the object of recreational and commercial exploitation in the study area. Lure-fishing sessions were carried out from May 2016 to November 2018 in the Catalan Sea (NE Spain) at dawn and dusk, with the aim of providing new insight into the behavioural, spatial and feeding ecology and vulnerability to angling of this poorly known species. Generalized mixed-effects linear models showed that S. viridensis is a crepuscular inshore dweller, whose vulnerability to angling is significantly influenced by solar and lunar light intensities, being highest in the pre-spawn and spawning periods. Asymmetries between dawn and dusk activity patterns were detected, evidently related to a drop in aggressiveness at dusk following the spawning period. The simple study design adopted may be applied to other contexts, aiming to the recognition of several levels of fish vulnerability to angling.     

Deconstructing occupancy frequency distributions in stream insects: effects of body size and niche characteristics in different geographical regions

1. Occupancy frequency distributions (OFDs) are one means to study species distribution patterns, allowing the delineation of rare and common species. Very few studies have deconstructed entire assemblages by ecological or biological characteristics and subsequently examined OFDs in subgroups of species. 2. The effect of deconstruction of entire assemblages by niche breadth, niche position or body size classes on OFDs in stream insects in three drainage basins was examined. It was hypothesized that OFDs should not vary between different drainage basins, but they should be affected by deconstruction into different niche breadth, niche position or body size classes. 3. The OFDs were typically strongly right‐skewed in all drainage basins. The set of small‐sized species was strongly dominated by rare species, whereas the importance of rare species decreased with increasing body size. Further, while the OFDs of sets of species with marginal niche position or small niche breadth were strongly dominated by rare species, those of species with non‐marginal niche position or large niche breadth showed highly variable degrees of occupancy. The OFDs of non‐marginal species were even uniform in the entire data and one drainage basin, providing partial support to the a priori hypothesis. 4. Niche‐based explanations are likely to account for occupancies of marginal and small‐niched species, whereas the distributions of non‐marginal and broad‐niched species may be not only affected by niche‐based mechanisms but also by spatial dynamics. Deconstruction of OFDs by ecological and biological traits thus showed that the patterns may vary between different subgroups of species.     

Feeding of an Iberian stream cyprinid assemblage: seasonality of resource use in a highly variable environment

Food resource use by seven cyprinids from an Iberian stream was analysed over 9 months. Differences in food resource use were found both between species and within species between seasons. Plant material was a more important food for carp, nase, goldfish and barbel than for gudgeon, roach and chub, irrespective of the season. Chironomid larvae were the staple animal food for the former five species throughout the year. Roach and chub, especially the latter, displayed large seasonal variations in prey use, with chironomid larvae only being important during autumn. Ephemerellid nymphs and ephemeropteran imagos dominated the animal diet of chub during spring and summer, respectively. Dipteran adults and Formicidae were the most important prey for roach during spring and summer, with other common prey being ephemerellid nymphs and hydropsychid larvae. Food resource overlap among the three dominant species (roach, barbel and chub) displayed a large seasonal variation. High overlaps were observed during autumn when these species used the same resources. During summer overlaps were much lower with each species specialising on different prey. The remaining less abundant species had large diet overlaps amongst themselves and with barbel, over all seasons. It is suggested that morphological constraints, habitat partitioning and temporal changes in food resource limitation may be involved in producing these patterns of food resource use.     

Epigenetic inheritance and plant evolution

Being sessile organisms, plants show a high degree of developmental plasticity to cope with a constantly changing environment. While plasticity in plants is largely controlled genetically, recent studies have demonstrated the importance of epigenetic mechanisms, especially DNA methylation, for gene regulation and phenotypic plasticity in response to internal and external stimuli. Induced epigenetic changes can be a source of phenotypic variations in natural plant populations that can be inherited by progeny for multiple generations. Whether epigenetic phenotypic changes are advantageous in a given environment, and whether they are subject to natural selection is of great interest, and their roles in adaptation and evolution are an area of active research in plant ecology. This review is focused on the role of heritable epigenetic variation induced by environmental changes, and its potential influence on adaptation and evolution in plants.